Index

_

__init__() (HRFMatrix method) __repr__() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]

A

auc_to_estimates() (in module pySPFM.cli.auc_to_estimates)

C

clip() (in module pySPFM._solvers.spatial_regularization)

D

debiasing_block() (in module pySPFM._solvers.debiasing) debiasing_spike() (in module pySPFM._solvers.debiasing)

do_debias_block() (in module pySPFM._solvers.debiasing) do_debias_spike() (in module pySPFM._solvers.debiasing)

F

fit() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]

fit_transform() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]

G

generate_delta() (in module pySPFM._solvers.spatial_regularization) get_fitted_signal() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1] get_params() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]

get_residuals() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1] group_betas() (in module pySPFM._solvers.debiasing) group_hrf() (in module pySPFM._solvers.debiasing)

H

HRFMatrix (class in pySPFM._solvers.hrf_generator)

I

innovation_to_block() (in module pySPFM._solvers.debiasing)

L

LowRankPlusSparse (class in pySPFM), [1]

M

main() (in module pySPFM.cli.run) module pySPFM._solvers.debiasing pySPFM._solvers.fista pySPFM._solvers.hrf_generator pySPFM._solvers.lars pySPFM._solvers.select_lambda pySPFM._solvers.spatial_regularization pySPFM._solvers.stability_selection pySPFM.cli.auc_to_estimates pySPFM.cli.run pySPFM.io.read_data pySPFM.io.update_header pySPFM.io.write_data pySPFM.io.write_json pySPFM.utils.setup_loggers pySPFM.utils.teardown_loggers

P

pySPFM._solvers.debiasing module pySPFM._solvers.fista module pySPFM._solvers.hrf_generator module pySPFM._solvers.lars module pySPFM._solvers.select_lambda module pySPFM._solvers.spatial_regularization module pySPFM._solvers.stability_selection module pySPFM.cli.auc_to_estimates module

pySPFM.cli.run module pySPFM.io.read_data module pySPFM.io.update_header module pySPFM.io.write_data module pySPFM.io.write_json module pySPFM.utils.setup_loggers module pySPFM.utils.teardown_loggers module

S

score() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1] select_optimal_lambda() (in module pySPFM._solvers.lars) set_params() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]

solve_regularization_path() (in module pySPFM._solvers.lars) SparseDeconvolution (class in pySPFM), [1] spatial_structured_sparsity() (in module pySPFM._solvers.spatial_regularization) spatial_tikhonov() (in module pySPFM._solvers.spatial_regularization) StabilitySelection (class in pySPFM), [1]

T

transform() (LowRankPlusSparse method), [1] (SparseDeconvolution method), [1] (StabilitySelection method), [1]